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  5. GSVIVT01008407001

GSVIVT01008407001


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana


Gene families : OG0007516 (Archaeplastida) Phylogenetic Tree(s): OG0007516_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008407001
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AT4G02750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_05647 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_15476 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_35786 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
LOC_Os09g15800.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_10428421g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.15 Archaeplastida
MA_28607g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_296059g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.13 Archaeplastida
MA_658463g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_7379g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_74986g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Solyc03g119120.3.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.09 Archaeplastida
Solyc04g039940.3.1 No alias Pentatricopeptide repeat-containing protein At2g35030,... 0.05 Archaeplastida
Zm00001e033826_P001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 277 324
IPR002885 Pentatricopeptide_repeat 378 425
IPR002885 Pentatricopeptide_repeat 217 244
IPR002885 Pentatricopeptide_repeat 155 179
IPR002885 Pentatricopeptide_repeat 62 90
IPR002885 Pentatricopeptide_repeat 249 276
IPR002885 Pentatricopeptide_repeat 352 377
IPR002885 Pentatricopeptide_repeat 93 116
IPR002885 Pentatricopeptide_repeat 186 215
IPR002885 Pentatricopeptide_repeat 124 152
IPR002885 Pentatricopeptide_repeat 452 476
IPR032867 DYW_dom 551 674
No external refs found!