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  5. GSVIVT01008444001

GSVIVT01008444001


Description : Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001770 (Archaeplastida) Phylogenetic Tree(s): OG0001770_tree ,
OG_05_0001246 (LandPlants) Phylogenetic Tree(s): OG_05_0001246_tree ,
OG_06_0001272 (SeedPlants) Phylogenetic Tree(s): OG_06_0001272_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008444001
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.01 Archaeplastida
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_05351 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_13912 No alias RNA editing factor (OZ-type) 0.03 Archaeplastida
LOC_Os03g50120.1 No alias RNA editing factor (OZ-type) 0.01 Archaeplastida
LOC_Os03g50430.1 No alias RNA editing factor (OZ-type) 0.02 Archaeplastida
LOC_Os07g22024.1 No alias RNA editing factor (OZ-type) 0.01 Archaeplastida
MA_10434973g0010 No alias RNA editing factor (OZ-type) 0.02 Archaeplastida
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.02 Archaeplastida
MA_854125g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc01g099230.3.1 No alias RNA editing factor (OZ-type) 0.03 Archaeplastida
Solyc03g118680.3.1 No alias RNA editing factor (OZ-type) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 291 319
IPR001876 Znf_RanBP2 330 358
IPR001876 Znf_RanBP2 252 275
IPR001876 Znf_RanBP2 365 386
No external refs found!