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  5. GSVIVT01008528001

GSVIVT01008528001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL17 component


Gene families : OG0001876 (Archaeplastida) Phylogenetic Tree(s): OG0001876_tree ,
OG_05_0001644 (LandPlants) Phylogenetic Tree(s): OG_05_0001644_tree ,
OG_06_0001980 (SeedPlants) Phylogenetic Tree(s): OG_06_0001980_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008528001
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00159640 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
AMTR_s00013p00211990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
AMTR_s00013p00223470 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
AMTR_s00013p00224030 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
AT1G27400 No alias Ribosomal protein L22p/L17e family protein 0.38 Archaeplastida
AT1G67430 No alias Ribosomal protein L22p/L17e family protein 0.3 Archaeplastida
Cpa|evm.model.tig00001215.8 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
Cre13.g568900 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.43 Archaeplastida
LOC_Os08g41810.1 No alias component RPL17 of LSU proteome component 0.27 Archaeplastida
LOC_Os09g08430.1 No alias component RPL17 of LSU proteome component 0.23 Archaeplastida
MA_10430182g0010 No alias component RPL17 of LSU proteome component 0.15 Archaeplastida
MA_64923g0010 No alias component RPL17 of LSU proteome component 0.29 Archaeplastida
Mp1g10230.1 No alias component RPL17 of LSU proteome component 0.36 Archaeplastida
Pp3c11_5840V3.1 No alias Ribosomal protein L22p/L17e family protein 0.46 Archaeplastida
Pp3c1_6650V3.1 No alias Ribosomal protein L22p/L17e family protein 0.25 Archaeplastida
Pp3c2_29840V3.1 No alias Ribosomal protein L22p/L17e family protein 0.41 Archaeplastida
Pp3c7_25220V3.1 No alias Ribosomal protein L22p/L17e family protein 0.12 Archaeplastida
Pp3c7_25240V3.1 No alias Ribosomal protein L22p/L17e family protein 0.49 Archaeplastida
Smo96251 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Solyc03g111230.4.1 No alias component RPL17 of LSU proteome component 0.1 Archaeplastida
Solyc06g071870.3.1 No alias component RPL17 of LSU proteome component 0.31 Archaeplastida
Solyc06g071880.4.1 No alias component RPL17 of LSU proteome component 0.28 Archaeplastida
Zm00001e003661_P001 No alias component RPL17 of LSU proteome component 0.41 Archaeplastida
Zm00001e005470_P001 No alias component RPL17 of LSU proteome component 0.05 Archaeplastida
Zm00001e021953_P003 No alias component RPL17 of LSU proteome component 0.25 Archaeplastida
Zm00001e026882_P002 No alias component RPL17 of LSU proteome component 0.23 Archaeplastida
Zm00001e031261_P001 No alias component RPL17 of LSU proteome component 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001063 Ribosomal_L22 43 178
No external refs found!