GSVIVT01008560001

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01008560001
Cluster	HCCA: Cluster_98

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00217560	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00017p00244900	evm_27.TU.AmTr_v1...	Floral homeotic protein PMADS 2 OS=Petunia hybrida	0.04	Archaeplastida
AMTR_s00047p00190220	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00071p00198970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
AMTR_s00089p00081270	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00109p00015260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
AMTR_s00140p00045380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT1G71692	XAL1, AGL12	AGAMOUS-like 12	0.04	Archaeplastida
AT1G77950	AGL67	AGAMOUS-like 67	0.04	Archaeplastida
AT2G24840	AGL61, DIA	AGAMOUS-like 61	0.02	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT3G04100	AGL57	AGAMOUS-like 57	0.03	Archaeplastida
AT3G54340	AP3, ATAP3	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.04	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT4G24540	AGL24	AGAMOUS-like 24	0.04	Archaeplastida
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT5G60440	AGL62	AGAMOUS-like 62	0.03	Archaeplastida
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.02	Archaeplastida
GSVIVT01003864001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01006592001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01010218001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01012249001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01018450001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01026207001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01027579001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01033253001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01037026001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01037031001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01038474001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Gb_03807	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Gb_05128	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_12586	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_15398	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os01g10504.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os01g66290.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os02g07430.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os02g45770.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g03100.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
LOC_Os03g11614.1	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
LOC_Os03g54160.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os05g11414.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g11330.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g23950.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os06g23980.1	No alias	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.05	Archaeplastida
LOC_Os08g41960.1	No alias	transcription factor (MADS/AGL)	0.01	Archaeplastida
LOC_Os09g32948.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os12g31748.2	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_10432817g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_10434339g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.03	Archaeplastida
MA_16629g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_175522g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_25342g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_32676g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_333471g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_5917g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_6279308g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_629987g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.03	Archaeplastida
MA_6544g0010	No alias	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.05	Archaeplastida
MA_78010g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
Solyc01g093960.3.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc01g106710.1.1	No alias	component MED19 of head module of MEDIATOR transcription...	0.09	Archaeplastida
Solyc02g065730.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc02g071730.4.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc02g089200.4.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc02g089210.4.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc03g114830.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc05g015750.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc06g064840.4.1	No alias	no description available(sp\|f6i457\|ag11c_vitvi : 172.0)	0.02	Archaeplastida
Solyc08g067230.4.1	No alias	No annotation	0.02	Archaeplastida
Solyc10g044965.1.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc10g080030.2.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc11g005120.3.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc11g010570.2.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc11g032100.2.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc12g038510.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc12g056460.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e000846_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e003667_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e005705_P004	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e006950_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e010125_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e012026_P002	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e015728_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e016529_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e019029_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e030187_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e034629_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e036159_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e038716_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e039610_P001	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Zm00001e039774_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0009250	glucan biosynthetic process	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016759	cellulose synthase activity	IEP	Neighborhood
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
BP	GO:0030244	cellulose biosynthetic process	IEP	Neighborhood
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Neighborhood
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
MF	GO:0046527	glucosyltransferase activity	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	85	171

External Links

No external refs found!

GSVIVT01008560001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation