Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor
Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0002311 (SeedPlants) Phylogenetic Tree(s): OG_06_0002311_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01008639001 | |
Cluster | HCCA: Cluster_247 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00029p00157690 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.B3... | 0.02 | Archaeplastida | |
LOC_Os08g40900.1 | No alias | transcription factor (ARF) | 0.03 | Archaeplastida | |
LOC_Os12g29520.1 | No alias | transcription factor (ARF) | 0.04 | Archaeplastida | |
MA_10432580g0010 | No alias | transcription factor (ARF) | 0.03 | Archaeplastida | |
MA_85955g0020 | No alias | transcription factor (ARF) | 0.04 | Archaeplastida | |
Pp3c4_12970V3.1 | No alias | auxin response factor 16 | 0.02 | Archaeplastida | |
Zm00001e006640_P002 | No alias | transcription factor (ARF) | 0.06 | Archaeplastida | |
Zm00001e012670_P001 | No alias | transcription factor (ARF) | 0.03 | Archaeplastida | |
Zm00001e014833_P002 | No alias | transcription factor (ARF) | 0.03 | Archaeplastida | |
Zm00001e041866_P001 | No alias | transcription factor (ARF) | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
CC | GO:0005634 | nucleus | IEA | Interproscan |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | Interproscan |
BP | GO:0009725 | response to hormone | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000123 | histone acetyltransferase complex | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
BP | GO:0007062 | sister chromatid cohesion | IEP | Neighborhood |
BP | GO:0007064 | mitotic sister chromatid cohesion | IEP | Neighborhood |
BP | GO:0016579 | protein deubiquitination | IEP | Neighborhood |
MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Neighborhood |
BP | GO:0022402 | cell cycle process | IEP | Neighborhood |
CC | GO:0031248 | protein acetyltransferase complex | IEP | Neighborhood |
MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEP | Neighborhood |
CC | GO:0044451 | nucleoplasm part | IEP | Neighborhood |
BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
CC | GO:0070461 | SAGA-type complex | IEP | Neighborhood |
BP | GO:0070646 | protein modification by small protein removal | IEP | Neighborhood |
MF | GO:0101005 | ubiquitinyl hydrolase activity | IEP | Neighborhood |
CC | GO:1902493 | acetyltransferase complex | IEP | Neighborhood |
BP | GO:1903047 | mitotic cell cycle process | IEP | Neighborhood |
CC | GO:1990234 | transferase complex | IEP | Neighborhood |
No external refs found! |