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  5. GSVIVT01008715001

GSVIVT01008715001


Description : Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000064 (SeedPlants) Phylogenetic Tree(s): OG_06_0000064_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008715001
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00127300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT2G03880 REME1 Pentatricopeptide repeat (PPR) superfamily protein 0.11 Archaeplastida
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
AT5G08305 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Gb_00522 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_01226 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_02911 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_03474 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_04417 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
Gb_05883 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_06272 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_07638 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
Gb_07727 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_09361 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Gb_10709 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_10903 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_12722 No alias RNA editing factor (MEF9) 0.05 Archaeplastida
Gb_15507 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_16070 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_17095 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_20837 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_21064 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_21437 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_25581 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_25737 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Gb_25869 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
Gb_26501 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_27462 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_27521 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_27797 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_28030 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 Archaeplastida
Gb_28343 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_28762 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_28770 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_29557 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_29768 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.05 Archaeplastida
Gb_29874 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_32256 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
Gb_32447 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.05 Archaeplastida
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Gb_34963 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_36177 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_38441 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
Gb_38504 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_39300 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
Gb_40432 No alias RNA editing factor (MEF19) 0.05 Archaeplastida
Gb_40437 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
Gb_40749 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
LOC_Os01g55960.1 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.06 Archaeplastida
MA_10426261g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_10429069g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_10430355g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_110g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_116829g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_117676g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_139163g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_140591g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.02 Archaeplastida
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_24849g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_2991g0010 No alias RNA editing factor (MEF12) 0.02 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_3612g0010 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.05 Archaeplastida
MA_442926g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_4503g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_46875g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
MA_482767g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.06 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.08 Archaeplastida
MA_70677g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_71104g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
MA_75133g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
MA_8678g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_9415113g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_95507g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_98224g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Smo109721 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
Smo124576 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.09 Archaeplastida
Smo126797 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Solyc01g081560.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc01g095160.3.1 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.04 Archaeplastida
Solyc01g099000.1.1 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.12 Archaeplastida
Solyc01g110010.3.1 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.03 Archaeplastida
Solyc02g094125.1.1 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.11 Archaeplastida
Solyc03g051780.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.09 Archaeplastida
Solyc03g063160.1.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
Solyc05g012630.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc06g053850.4.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc06g069700.4.1 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.03 Archaeplastida
Solyc06g082880.2.1 No alias RNA editing factor (MEF13) 0.04 Archaeplastida
Solyc06g084580.1.1 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
Solyc07g045510.4.1 No alias RNA editing factor (MEF7) 0.12 Archaeplastida
Solyc07g055310.1.1 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.02 Archaeplastida
Solyc08g014100.1.1 No alias Pentatricopeptide repeat-containing protein At5g43790... 0.03 Archaeplastida
Solyc08g023640.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc09g007040.1.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.05 Archaeplastida
Solyc09g008300.2.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.12 Archaeplastida
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.09 Archaeplastida
Solyc11g005960.1.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Solyc11g007230.1.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.05 Archaeplastida
Solyc12g042400.1.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.08 Archaeplastida
Zm00001e001007_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
Zm00001e001038_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.08 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.05 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e003284_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e006389_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e007597_P001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Zm00001e009484_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.05 Archaeplastida
Zm00001e011519_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Zm00001e011923_P001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Zm00001e012607_P002 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
Zm00001e018346_P001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.08 Archaeplastida
Zm00001e018597_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Zm00001e023333_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e023504_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Zm00001e027978_P001 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Zm00001e031396_P001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.09 Archaeplastida
Zm00001e032242_P001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.04 Archaeplastida
Zm00001e033310_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida
Zm00001e036537_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 273 321
IPR002885 Pentatricopeptide_repeat 476 523
IPR002885 Pentatricopeptide_repeat 374 422
IPR002885 Pentatricopeptide_repeat 69 117
IPR002885 Pentatricopeptide_repeat 616 645
IPR002885 Pentatricopeptide_repeat 248 268
IPR002885 Pentatricopeptide_repeat 147 173
IPR002885 Pentatricopeptide_repeat 175 203
No external refs found!