GSVIVT01008740001

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1

Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0005403 (LandPlants) Phylogenetic Tree(s): OG_05_0005403_tree ,
OG_06_0005891 (SeedPlants) Phylogenetic Tree(s): OG_06_0005891_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01008740001
Cluster	HCCA: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00152770	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.07	Archaeplastida
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.08	Archaeplastida
Cpa\|evm.model.tig00000241.15	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
Cre03.g165750	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
Gb_06029	No alias	subunit 1 of Pol II RNA polymerase	0.03	Archaeplastida
Gb_21425	No alias	subunit 1 of Pol V RNA polymerase	0.03	Archaeplastida
Gb_33197	No alias	subunit 1 of Pol II RNA polymerase	0.08	Archaeplastida
LOC_Os02g05880.1	No alias	subunit 1 of Pol V RNA polymerase	0.03	Archaeplastida
LOC_Os05g05860.1	No alias	subunit 1 of Pol II RNA polymerase	0.02	Archaeplastida
MA_5690g0010	No alias	subunit 1 of Pol II RNA polymerase	0.03	Archaeplastida
Mp3g15530.1	No alias	subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V...	0.02	Archaeplastida
Mp4g14340.1	No alias	subunit 1 of Pol II RNA polymerase	0.02	Archaeplastida
Mp7g16790.1	No alias	subunit 1 of Pol III RNA polymerase	0.03	Archaeplastida
Pp3c17_4860V3.1	No alias	nuclear RNA polymerase C1	0.03	Archaeplastida
Pp3c1_32300V3.1	No alias	RNA polymerase II large subunit	0.04	Archaeplastida
Smo110201	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006913	nucleocytoplasmic transport	IEP	Neighborhood
BP	GO:0006914	autophagy	IEP	Neighborhood
MF	GO:0008047	enzyme activator activity	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
BP	GO:0043085	positive regulation of catalytic activity	IEP	Neighborhood
BP	GO:0044093	positive regulation of molecular function	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0048519	negative regulation of biological process	IEP	Neighborhood
BP	GO:0050790	regulation of catalytic activity	IEP	Neighborhood
BP	GO:0051169	nuclear transport	IEP	Neighborhood
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Neighborhood
BP	GO:0065009	regulation of molecular function	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007080	RNA_pol_Rpb1_1	14	398
IPR000722	RNA_pol_asu	400	568
IPR007075	RNA_pol_Rpb1_6	939	981
IPR000684	RNA_pol_II_repeat_euk	1497	1510
IPR000684	RNA_pol_II_repeat_euk	1353	1366
IPR000684	RNA_pol_II_repeat_euk	1374	1387
IPR000684	RNA_pol_II_repeat_euk	1346	1359
IPR000684	RNA_pol_II_repeat_euk	1305	1317
IPR000684	RNA_pol_II_repeat_euk	1367	1380
IPR000684	RNA_pol_II_repeat_euk	1483	1496
IPR000684	RNA_pol_II_repeat_euk	1339	1352
IPR000684	RNA_pol_II_repeat_euk	1318	1331
IPR000684	RNA_pol_II_repeat_euk	1381	1394
IPR000684	RNA_pol_II_repeat_euk	1332	1345
IPR000684	RNA_pol_II_repeat_euk	1511	1524
IPR000684	RNA_pol_II_repeat_euk	1450	1463
IPR000684	RNA_pol_II_repeat_euk	1360	1373
IPR007081	RNA_pol_Rpb1_5	873	1226
IPR007066	RNA_pol_Rpb1_3	572	735
IPR007083	RNA_pol_Rpb1_4	764	866

External Links

No external refs found!

GSVIVT01008740001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation