GSVIVT01008806001

Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01008806001
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00217560	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00001p00218870	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
AMTR_s00017p00244900	evm_27.TU.AmTr_v1...	Floral homeotic protein PMADS 2 OS=Petunia hybrida	0.03	Archaeplastida
AMTR_s00066p00109320	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00071p00193200	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00140p00045380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT1G71692	XAL1, AGL12	AGAMOUS-like 12	0.06	Archaeplastida
AT2G22630	AGL17	AGAMOUS-like 17	0.05	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT2G45650	AGL6	AGAMOUS-like 6	0.07	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G04100	AGL57	AGAMOUS-like 57	0.04	Archaeplastida
AT3G54340	AP3, ATAP3	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.06	Archaeplastida
AT3G61120	AGL13	AGAMOUS-like 13	0.03	Archaeplastida
AT4G09960	STK, AGL11	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.04	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT4G24540	AGL24	AGAMOUS-like 24	0.03	Archaeplastida
AT5G20240	PI	K-box region and MADS-box transcription factor family protein	0.06	Archaeplastida
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
GSVIVT01008560001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01019883001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01026207001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01033253001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01035477001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.07	Archaeplastida
GSVIVT01036549001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01038474001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Gb_05128	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Gb_16301	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
Gb_28337	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.05	Archaeplastida
LOC_Os01g10504.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os01g66290.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os02g07430.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os02g36924.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os02g45770.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g11614.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
LOC_Os03g54160.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g54170.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os05g11380.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os05g11414.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os05g34940.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g23980.1	No alias	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.05	Archaeplastida
LOC_Os08g38590.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os08g41950.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os09g02780.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
LOC_Os09g32948.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os12g10540.3	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
MA_10434339g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.04	Archaeplastida
MA_113509g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_13933g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_16120g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_16629g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_175522g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_18048g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_19387g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_20467g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_20467g0020	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.03	Archaeplastida
MA_25342g0010	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
MA_333471g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_502016g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.02	Archaeplastida
MA_6279308g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_629987g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.04	Archaeplastida
MA_6544g0010	No alias	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.03	Archaeplastida
MA_9382435g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_9771g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Pp3c16_19170V3.1	No alias	AGAMOUS-like 61	0.03	Archaeplastida
Pp3c17_13070V3.1	No alias	AGAMOUS-like 66	0.03	Archaeplastida
Pp3c25_6940V3.1	No alias	AGAMOUS-like 62	0.03	Archaeplastida
Pp3c8_6920V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
Solyc01g080785.1.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc01g093960.3.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
Solyc01g106710.1.1	No alias	component MED19 of head module of MEDIATOR transcription...	0.06	Archaeplastida
Solyc02g065730.2.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc02g089210.4.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc04g005320.3.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc06g064840.4.1	No alias	no description available(sp\|f6i457\|ag11c_vitvi : 172.0)	0.08	Archaeplastida
Solyc07g055920.4.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc08g067230.4.1	No alias	No annotation	0.03	Archaeplastida
Solyc10g044965.1.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc11g005120.3.1	No alias	no hits & (original description: none)	0.07	Archaeplastida
Solyc11g010570.2.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc11g032100.2.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc12g038510.2.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc12g056460.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e000846_P003	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e003667_P001	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e005708_P002	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e006950_P001	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e010125_P001	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e013738_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e015447_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e016529_P004	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e019029_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e019057_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e023236_P005	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e027031_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e027034_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e030187_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e034629_P001	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e038716_P004	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e039774_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	IEP	Neighborhood
MF	GO:0003872	6-phosphofructokinase activity	IEP	Neighborhood
MF	GO:0004402	histone acetyltransferase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0006475	internal protein amino acid acetylation	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
MF	GO:0008080	N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008443	phosphofructokinase activity	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016289	CoA hydrolase activity	IEP	Neighborhood
MF	GO:0016407	acetyltransferase activity	IEP	Neighborhood
MF	GO:0016410	N-acyltransferase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016573	histone acetylation	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Neighborhood
MF	GO:0019200	carbohydrate kinase activity	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood
CC	GO:0098588	bounding membrane of organelle	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	1	29
IPR002487	TF_Kbox	54	133

External Links

No external refs found!

GSVIVT01008806001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation