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  5. GSVIVT01008834001

GSVIVT01008834001


Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0009410 (LandPlants) Phylogenetic Tree(s): OG_05_0009410_tree ,
OG_06_0006604 (SeedPlants) Phylogenetic Tree(s): OG_06_0006604_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008834001
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01012605001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.08 Archaeplastida
GSVIVT01021066001 No alias Beta-galactosidase 10 OS=Arabidopsis thaliana 0.05 Archaeplastida
Gb_32359 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Gb_35384 No alias Beta-galactosidase 9 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Gb_39826 No alias Beta-galactosidase 6 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Gb_39827 No alias Beta-galactosidase 8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e019757_P001 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000922 Lectin_gal-bd_dom 739 816
IPR031330 Gly_Hdrlase_35_cat 34 341
No external refs found!