GSVIVT01008897001

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase

Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0001181 (SeedPlants) Phylogenetic Tree(s): OG_06_0001181_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01008897001
Cluster	HCCA: Cluster_16

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00271240	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.06	Archaeplastida
AMTR_s00009p00057950	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
AMTR_s00026p00191500	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
AT1G21960	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT2G44330	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT3G13228	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
AT3G30460	No alias	RING/U-box superfamily protein	0.07	Archaeplastida
AT5G53910	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
AT5G54990	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
GSVIVT01020763001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01022971001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Gb_11308	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_23254	No alias	Probable E3 ubiquitin-protein ligase RHC1A...	0.04	Archaeplastida
LOC_Os06g08250.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os12g04590.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_433917g0010	No alias	Probable E3 ubiquitin-protein ligase RHC1A...	0.05	Archaeplastida
MA_76949g0010	No alias	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana...	0.05	Archaeplastida
MA_816375g0010	No alias	Probable E3 ubiquitin-protein ligase RHC1A...	0.06	Archaeplastida
Mp7g04520.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e009866_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e038199_P001	No alias	Probable E3 ubiquitin-protein ligase RHC1A...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	Interproscan
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015988	energy coupled proton transmembrane transport, against electrochemical gradient	IEP	Neighborhood
BP	GO:0015991	ATP hydrolysis coupled proton transport	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0019829	cation-transporting ATPase activity	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Neighborhood
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Neighborhood
MF	GO:0036442	proton-exporting ATPase activity	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
MF	GO:0042625	ATPase coupled ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Neighborhood
BP	GO:0090662	ATP hydrolysis coupled transmembrane transport	IEP	Neighborhood
BP	GO:0099131	ATP hydrolysis coupled ion transmembrane transport	IEP	Neighborhood
BP	GO:0099132	ATP hydrolysis coupled cation transmembrane transport	IEP	Neighborhood
BP	GO:1902600	proton transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	205	247

External Links

No external refs found!

GSVIVT01008897001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation