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  5. AMTR_s00036p00235910

AMTR_s00036p00235910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00036.181

No description available


Gene families : OG0001895 (Archaeplastida) Phylogenetic Tree(s): OG0001895_tree ,
OG_05_0001910 (LandPlants) Phylogenetic Tree(s): OG_05_0001910_tree ,
OG_06_0001734 (SeedPlants) Phylogenetic Tree(s): OG_06_0001734_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00036p00235910
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT1G33680 No alias KH domain-containing protein 0.03 Archaeplastida
AT2G25970 No alias KH domain-containing protein 0.04 Archaeplastida
Cpa|evm.model.tig00020553.157 No alias Protein BTR1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre06.g250800 No alias No description available 0.03 Archaeplastida
GSVIVT01035354001 No alias No description available 0.02 Archaeplastida
GSVIVT01036378001 No alias No description available 0.05 Archaeplastida
Gb_31122 No alias Protein BTR1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_10434164g0020 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_13061g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c11_17830V3.1 No alias KH domain-containing protein 0.02 Archaeplastida
Pp3c7_11410V3.1 No alias KH domain-containing protein 0.04 Archaeplastida
Smo437890 No alias Protein BTR1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc11g040370.2.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc12g095960.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e014452_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e024927_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e029163_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
MF GO:0003852 2-isopropylmalate synthase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005665 RNA polymerase II, core complex IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006551 leucine metabolic process IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009098 leucine biosynthetic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 134 198
IPR004088 KH_dom_type_1 228 292
No external refs found!