GSVIVT01008933001

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS13 | mtRPS13 component

Gene families : OG0005606 (Archaeplastida) Phylogenetic Tree(s): OG0005606_tree ,
OG_05_0007082 (LandPlants) Phylogenetic Tree(s): OG_05_0007082_tree ,
OG_06_0009507 (SeedPlants) Phylogenetic Tree(s): OG_06_0009507_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01008933001
Cluster	HCCA: Cluster_176

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00089340	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.03	Archaeplastida
AT5G14320	No alias	Ribosomal protein S13/S18 family	0.23	Archaeplastida
Cre12.g493950	No alias	Protein biosynthesis.organelle translation...	0.12	Archaeplastida
Gb_24491	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.11	Archaeplastida
LOC_Os03g49710.1	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.13	Archaeplastida
MA_10431241g0010	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.05	Archaeplastida
Mp1g18230.1	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.14	Archaeplastida
Pp3c15_12110V3.1	No alias	Ribosomal protein S13/S18 family	0.14	Archaeplastida
Pp3c15_12140V3.1	No alias	Ribosomal protein S13/S18 family	0.12	Archaeplastida
Solyc05g005880.2.1	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.03	Archaeplastida
Zm00001e005396_P004	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0001932	regulation of protein phosphorylation	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
MF	GO:0008565	protein transporter activity	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
CC	GO:0009512	cytochrome b6f complex	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009522	photosystem I	IEP	Neighborhood
CC	GO:0009523	photosystem II	IEP	Neighborhood
CC	GO:0009538	photosystem I reaction center	IEP	Neighborhood
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Neighborhood
BP	GO:0010207	photosystem II assembly	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016872	intramolecular lyase activity	IEP	Neighborhood
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Neighborhood
BP	GO:0019725	cellular homeostasis	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
MF	GO:0019900	kinase binding	IEP	Neighborhood
MF	GO:0019901	protein kinase binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0031399	regulation of protein modification process	IEP	Neighborhood
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0042325	regulation of phosphorylation	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
BP	GO:0043549	regulation of kinase activity	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
BP	GO:0045454	cell redox homeostasis	IEP	Neighborhood
BP	GO:0045859	regulation of protein kinase activity	IEP	Neighborhood
BP	GO:0050790	regulation of catalytic activity	IEP	Neighborhood
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Neighborhood
BP	GO:0051246	regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051338	regulation of transferase activity	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood
MF	GO:0051920	peroxiredoxin activity	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0065009	regulation of molecular function	IEP	Neighborhood
CC	GO:0070069	cytochrome complex	IEP	Neighborhood
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	48	152

External Links

No external refs found!

GSVIVT01008933001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation