Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor

Gene families : OG0001705 (Archaeplastida) Phylogenetic Tree(s): OG0001705_tree ,
OG_05_0001491 (LandPlants) Phylogenetic Tree(s): OG_05_0001491_tree ,
OG_06_0001255 (SeedPlants) Phylogenetic Tree(s): OG_06_0001255_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: GSVIVT01009197001
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
MpVg00300.1 No alias No annotation 0.04 Archaeplastida
Pp3c17_23200V3.1 No alias ZIM-like 1 0.03 Archaeplastida
Zm00001e013157_P003 No alias transcription factor (GATA) 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR010399 Tify_dom 26 58
IPR010402 CCT_domain 91 133
IPR000679 Znf_GATA 159 195
No external refs found!