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  5. GSVIVT01009244001

GSVIVT01009244001


Description : RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component


Gene families : OG0001799 (Archaeplastida) Phylogenetic Tree(s): OG0001799_tree ,
OG_05_0002801 (LandPlants) Phylogenetic Tree(s): OG_05_0002801_tree ,
OG_06_0002268 (SeedPlants) Phylogenetic Tree(s): OG_06_0002268_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009244001
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00088050 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 Archaeplastida
AT1G27595 No alias CONTAINS InterPro DOMAIN/s: Symplekin tight junction... 0.09 Archaeplastida
AT5G01400 ESP4 HEAT repeat-containing protein 0.06 Archaeplastida
GSVIVT01011157001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 Archaeplastida
Gb_23976 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Gb_24672 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.08 Archaeplastida
LOC_Os01g49940.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.1 Archaeplastida
LOC_Os07g49320.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
MA_10426054g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 Archaeplastida
MA_10426054g0020 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.06 Archaeplastida
MA_10430259g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.07 Archaeplastida
MA_10432378g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.07 Archaeplastida
MA_34105g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
Mp6g03410.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
Pp3c2_10640V3.1 No alias HEAT repeat-containing protein 0.03 Archaeplastida
Smo442688 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 Archaeplastida
Solyc04g076910.3.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.08 Archaeplastida
Solyc09g005330.3.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 Archaeplastida
Solyc09g005340.3.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Zm00001e020082_P004 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.06 Archaeplastida
Zm00001e035946_P001 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022075 Symplekin_C 824 1002
IPR032460 Symplekin/Pta1_N 57 135
No external refs found!