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  5. GSVIVT01009401001

GSVIVT01009401001


Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0000021 (LandPlants) Phylogenetic Tree(s): OG_05_0000021_tree ,
OG_06_0000387 (SeedPlants) Phylogenetic Tree(s): OG_06_0000387_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009401001
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00181650 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AMTR_s00039p00193810 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00057p00086480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AMTR_s00088p00145510 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.01 Archaeplastida
AMTR_s00138p00067840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.08 Archaeplastida
AMTR_s00150p00049910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AT2G42410 ZFP11, ATZFP11 zinc finger protein 11 0.01 Archaeplastida
AT3G23130 SUP, FLO10, FON1 C2H2 and C2HC zinc fingers superfamily protein 0.01 Archaeplastida
AT5G01860 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
AT5G05120 No alias C2H2 and C2HC zinc fingers superfamily protein 0.01 Archaeplastida
AT5G06650 GIS2 C2H2 and C2HC zinc fingers superfamily protein 0.05 Archaeplastida
AT5G27880 No alias C2H2 and C2HC zinc fingers superfamily protein 0.01 Archaeplastida
GSVIVT01011868001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
Gb_16852 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os01g03840.1 No alias Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp.... 0.04 Archaeplastida
LOC_Os03g11680.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os09g38610.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_424g0010 No alias C2H2 zinc finger transcription factor 0.01 Archaeplastida
Pp3c20_10790V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.01 Archaeplastida
Pp3c23_2190V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.01 Archaeplastida
Pp3c23_800V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.01 Archaeplastida
Pp3c23_861V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.01 Archaeplastida
Pp3c23_960V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.01 Archaeplastida
Pp3c3_21050V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.01 Archaeplastida
Pp3c3_5040V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Solyc01g060420.2.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Solyc03g113890.1.1 No alias no hits & (original description: none) 0.25 Archaeplastida
Solyc05g006310.3.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc07g006880.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc09g089590.1.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Solyc10g080600.3.1 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e013379_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e020926_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e025728_P002 No alias Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Zm00001e032639_P001 No alias C2H2 zinc finger transcription factor 0.01 Archaeplastida
Zm00001e034219_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e034220_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e034221_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e034883_P001 No alias C2H2 zinc finger transcription factor 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!