GSVIVT01009478001


Description : Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana


Gene families : OG0002482 (Archaeplastida) Phylogenetic Tree(s): OG0002482_tree ,
OG_05_0002778 (LandPlants) Phylogenetic Tree(s): OG_05_0002778_tree ,
OG_06_0002789 (SeedPlants) Phylogenetic Tree(s): OG_06_0002789_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009478001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cre06.g251350 No alias Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_10613 No alias pre-40S ribosomal subunit assembly factor (RID3) 0.04 Archaeplastida
LOC_Os07g22534.1 No alias pre-40S ribosomal subunit assembly factor (RID3) 0.04 Archaeplastida
Mp7g09900.1 No alias pre-40S ribosomal subunit assembly factor (RID3) 0.03 Archaeplastida
Pp3c18_8470V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Solyc04g078780.3.1 No alias pre-40S ribosomal subunit assembly factor (RID3) 0.03 Archaeplastida
Zm00001e032455_P007 No alias pre-40S ribosomal subunit assembly factor (RID3) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0031167 rRNA methylation IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0036265 RNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0070475 rRNA base methylation IEP Neighborhood
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 116 153
IPR001680 WD40_repeat 172 208
IPR001680 WD40_repeat 265 300
No external refs found!