Description : Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana
Gene families : OG0002482 (Archaeplastida) Phylogenetic Tree(s): OG0002482_tree ,
OG_05_0002778 (LandPlants) Phylogenetic Tree(s): OG_05_0002778_tree ,
OG_06_0002789 (SeedPlants) Phylogenetic Tree(s): OG_06_0002789_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01009478001 | |
Cluster | HCCA: Cluster_44 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre06.g251350 | No alias | Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana | 0.01 | Archaeplastida | |
Gb_10613 | No alias | pre-40S ribosomal subunit assembly factor (RID3) | 0.04 | Archaeplastida | |
LOC_Os07g22534.1 | No alias | pre-40S ribosomal subunit assembly factor (RID3) | 0.04 | Archaeplastida | |
Mp7g09900.1 | No alias | pre-40S ribosomal subunit assembly factor (RID3) | 0.03 | Archaeplastida | |
Pp3c18_8470V3.1 | No alias | Transducin/WD40 repeat-like superfamily protein | 0.02 | Archaeplastida | |
Solyc04g078780.3.1 | No alias | pre-40S ribosomal subunit assembly factor (RID3) | 0.03 | Archaeplastida | |
Zm00001e032455_P007 | No alias | pre-40S ribosomal subunit assembly factor (RID3) | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | Neighborhood |
BP | GO:0001510 | RNA methylation | IEP | Neighborhood |
MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
MF | GO:0005525 | GTP binding | IEP | Neighborhood |
BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006413 | translational initiation | IEP | Neighborhood |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008649 | rRNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Neighborhood |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | Neighborhood |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
BP | GO:0031167 | rRNA methylation | IEP | Neighborhood |
BP | GO:0032259 | methylation | IEP | Neighborhood |
MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | Neighborhood |
BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
BP | GO:0070475 | rRNA base methylation | IEP | Neighborhood |
BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | Neighborhood |
MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Neighborhood |
No external refs found! |