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  5. GSVIVT01009650001

GSVIVT01009650001


Description : Chromatin organisation.histone modifications.histone deacetylation.histone deacetylase machineries.SAP30 associated component


Gene families : OG0001164 (Archaeplastida) Phylogenetic Tree(s): OG0001164_tree ,
OG_05_0000888 (LandPlants) Phylogenetic Tree(s): OG_05_0000888_tree ,
OG_06_0002206 (SeedPlants) Phylogenetic Tree(s): OG_06_0002206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009650001
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00143240 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.03 Archaeplastida
AT1G19330 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.04 Archaeplastida
LOC_Os04g08450.3 No alias associated component SAP30 of histone deacetylase machineries 0.02 Archaeplastida
MA_45410g0010 No alias associated component SAP30 of histone deacetylase machineries 0.03 Archaeplastida
Pp3c20_1200V3.1 No alias No annotation 0.02 Archaeplastida
Solyc04g079930.3.1 No alias associated component SAP30 of histone deacetylase machineries 0.05 Archaeplastida
Zm00001e027006_P001 No alias associated component SAP30 of histone deacetylase machineries 0.07 Archaeplastida
Zm00001e031726_P001 No alias associated component SAP30 of histone deacetylase machineries 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006658 phosphatidylserine metabolic process IEP Neighborhood
BP GO:0006659 phosphatidylserine biosynthetic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR025718 SAP30_Sin3-bd 163 216
No external refs found!