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  5. GSVIVT01009728001

GSVIVT01009728001


Description : RNA biosynthesis.transcriptional activation.TUB transcription factor


Gene families : OG0000335 (Archaeplastida) Phylogenetic Tree(s): OG0000335_tree ,
OG_05_0000295 (LandPlants) Phylogenetic Tree(s): OG_05_0000295_tree ,
OG_06_0000341 (SeedPlants) Phylogenetic Tree(s): OG_06_0000341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009728001
Cluster HCCA: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
Gb_35372 No alias transcription factor (TUB) 0.03 Archaeplastida
MA_10430830g0020 No alias transcription factor (TUB) 0.03 Archaeplastida
Pp3c20_2160V3.1 No alias tubby like protein 3 0.03 Archaeplastida
Zm00001e015581_P001 No alias transcription factor (TUB) 0.04 Archaeplastida
Zm00001e023326_P001 No alias transcription factor (TUB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000007 Tubby_C 119 362
IPR001810 F-box_dom 56 108
No external refs found!