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  5. GSVIVT01009769001

GSVIVT01009769001


Description : Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic20-I/IV component


Gene families : OG0004638 (Archaeplastida) Phylogenetic Tree(s): OG0004638_tree ,
OG_05_0004590 (LandPlants) Phylogenetic Tree(s): OG_05_0004590_tree ,
OG_06_0006090 (SeedPlants) Phylogenetic Tree(s): OG_06_0006090_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009769001
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00238260 evm_27.TU.AmTr_v1... Protein translocation.chloroplast.inner envelope TIC... 0.02 Archaeplastida
AT1G04940 TIC20 translocon at the inner envelope membrane of chloroplasts 20 0.11 Archaeplastida
Cre08.g379650 No alias Protein translocation.chloroplast.inner envelope TIC... 0.03 Archaeplastida
LOC_Os07g38110.1 No alias component Tic20-I/IV of inner envelope TIC-20 complex 0.1 Archaeplastida
Mp3g05820.1 No alias component Tic20-I/IV of inner envelope TIC-20 complex 0.06 Archaeplastida
Pp3c16_16340V3.1 No alias translocon at the inner envelope membrane of chloroplasts 20 0.02 Archaeplastida
Pp3c27_1700V3.1 No alias translocon at the inner envelope membrane of chloroplasts 20 0.05 Archaeplastida
Solyc04g076740.3.1 No alias component Tic20-I/IV of inner envelope TIC-20 complex 0.03 Archaeplastida
Solyc05g054720.3.1 No alias component Tic20-I/IV of inner envelope TIC-20 complex 0.07 Archaeplastida
Zm00001e035290_P002 No alias component Tic20-I/IV of inner envelope TIC-20 complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004418 hydroxymethylbilane synthase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0004817 cysteine-tRNA ligase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015995 chlorophyll biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046834 lipid phosphorylation IEP Neighborhood
BP GO:0046854 phosphatidylinositol phosphorylation IEP Neighborhood
MF GO:0070567 cytidylyltransferase activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR005691 Tic20 92 265
No external refs found!