GSVIVT01009812001


Description : RNA biosynthesis.transcriptional activation.SRS transcription factor


Gene families : OG0001199 (Archaeplastida) Phylogenetic Tree(s): OG0001199_tree ,
OG_05_0000755 (LandPlants) Phylogenetic Tree(s): OG_05_0000755_tree ,
OG_06_0000578 (SeedPlants) Phylogenetic Tree(s): OG_06_0000578_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009812001
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00223800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SRS... 0.04 Archaeplastida
AMTR_s00063p00161200 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SRS... 0.03 Archaeplastida
AT1G19790 SRS7 SHI-related sequence 7 0.03 Archaeplastida
AT1G75520 SRS5 SHI-related sequence 5 0.06 Archaeplastida
AT3G51060 SRS1, STY1 Lateral root primordium (LRP) protein-related 0.08 Archaeplastida
AT4G36260 SRS2, STY2 Lateral root primordium (LRP) protein-related 0.04 Archaeplastida
AT5G12330 LRP1 Lateral root primordium (LRP) protein-related 0.05 Archaeplastida
AT5G66350 SHI Lateral root primordium (LRP) protein-related 0.09 Archaeplastida
GSVIVT01013486001 No alias RNA biosynthesis.transcriptional activation.SRS... 0.07 Archaeplastida
GSVIVT01024206001 No alias RNA biosynthesis.transcriptional activation.SRS... 0.05 Archaeplastida
Gb_11822 No alias transcription factor (SRS) 0.03 Archaeplastida
LOC_Os01g72490.1 No alias transcription factor (SRS) 0.04 Archaeplastida
LOC_Os05g32070.1 No alias transcription factor (SRS) 0.06 Archaeplastida
LOC_Os06g49830.1 No alias transcription factor (SRS) 0.04 Archaeplastida
LOC_Os08g43410.1 No alias transcription factor (SRS) 0.04 Archaeplastida
LOC_Os09g36160.1 No alias transcription factor (SRS) 0.02 Archaeplastida
MA_2299g0010 No alias transcription factor (SRS) 0.03 Archaeplastida
Mp3g19510.1 No alias transcription factor (SRS) 0.03 Archaeplastida
Pp3c18_8920V3.1 No alias Lateral root primordium (LRP) protein-related 0.03 Archaeplastida
Solyc02g062400.3.1 No alias transcription factor (SRS) 0.03 Archaeplastida
Solyc02g084680.3.1 No alias transcription factor (SRS) 0.03 Archaeplastida
Solyc04g080970.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc10g054070.1.1 No alias transcription factor (SRS) 0.04 Archaeplastida
Solyc11g064800.3.1 No alias transcription factor (SRS) 0.04 Archaeplastida
Zm00001e004006_P001 No alias transcription factor (SRS) 0.05 Archaeplastida
Zm00001e010227_P001 No alias transcription factor (SRS) 0.07 Archaeplastida
Zm00001e013256_P002 No alias transcription factor (SRS) 0.07 Archaeplastida
Zm00001e024681_P001 No alias transcription factor (SRS) 0.05 Archaeplastida
Zm00001e026854_P001 No alias transcription factor (SRS) 0.06 Archaeplastida
Zm00001e028304_P001 No alias transcription factor (SRS) 0.06 Archaeplastida
Zm00001e030189_P001 No alias transcription factor (SRS) 0.09 Archaeplastida
Zm00001e031567_P001 No alias transcription factor (SRS) 0.05 Archaeplastida
Zm00001e034798_P001 No alias transcription factor (SRS) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004664 prephenate dehydratase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006558 L-phenylalanine metabolic process IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009094 L-phenylalanine biosynthetic process IEP Neighborhood
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Neighborhood
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!