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  5. GSVIVT01009823001

GSVIVT01009823001


Description : Cold shock protein 1 OS=Arabidopsis thaliana


Gene families : OG0005188 (Archaeplastida) Phylogenetic Tree(s): OG0005188_tree ,
OG_05_0004258 (LandPlants) Phylogenetic Tree(s): OG_05_0004258_tree ,
OG_06_0005624 (SeedPlants) Phylogenetic Tree(s): OG_06_0005624_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009823001
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
MA_77330g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc10g054330.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003883 CTP synthase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004725 protein tyrosine phosphatase activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 133 149
IPR001878 Znf_CCHC 107 122
IPR001878 Znf_CCHC 50 66
IPR001878 Znf_CCHC 152 167
IPR001878 Znf_CCHC 207 221
IPR001878 Znf_CCHC 227 243
IPR001878 Znf_CCHC 171 187
IPR001878 Znf_CCHC 70 84
IPR001878 Znf_CCHC 89 104
No external refs found!