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  5. GSVIVT01009834001

GSVIVT01009834001


Description : Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana


Gene families : OG0004598 (Archaeplastida) Phylogenetic Tree(s): OG0004598_tree ,
OG_05_0003372 (LandPlants) Phylogenetic Tree(s): OG_05_0003372_tree ,
OG_06_0090442 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009834001
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00182p00016710 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.04 Archaeplastida
AT4G16310 LDL3 LSD1-like 3 0.21 Archaeplastida
Gb_40614 No alias lysine-specific demethylase (LDL3) 0.17 Archaeplastida
LOC_Os10g38850.1 No alias lysine-specific demethylase (LDL3) 0.07 Archaeplastida
MA_120420g0010 No alias no hits & (original description: none) 0.13 Archaeplastida
MA_120420g0020 No alias lysine-specific demethylase (LDL3) 0.23 Archaeplastida
Pp3c1_1170V3.1 No alias LSD1-like 3 0.17 Archaeplastida
Pp3c1_6380V3.1 No alias LSD1-like 3 0.15 Archaeplastida
Pp3c2_35420V3.1 No alias LSD1-like 3 0.08 Archaeplastida
Pp3c2_35433V3.1 No alias LSD1-like 3 0.03 Archaeplastida
Smo405878 No alias Chromatin organisation.histone modifications.histone... 0.09 Archaeplastida
Solyc04g081100.3.1 No alias lysine-specific demethylase (LDL3) 0.11 Archaeplastida
Zm00001e002184_P001 No alias lysine-specific demethylase (LDL3) 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0032947 protein-containing complex scaffold activity IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 620 705
IPR007526 SWIRM 403 482
No external refs found!