1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01009838001

GSVIVT01009838001


Description : Chromatin organisation.histones.H3-type histone


Gene families : OG0000119 (Archaeplastida) Phylogenetic Tree(s): OG0000119_tree ,
OG_05_0000124 (LandPlants) Phylogenetic Tree(s): OG_05_0000124_tree ,
OG_06_0000125 (SeedPlants) Phylogenetic Tree(s): OG_06_0000125_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009838001
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00225p00023630 No alias Chromatin organisation.histones.H3-type histone 0.06 Archaeplastida
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.06 Archaeplastida
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Gb_40804 No alias histone (H3) 0.04 Archaeplastida
LOC_Os01g64640.1 No alias histone (H3) 0.03 Archaeplastida
LOC_Os05g41080.1 No alias histone H3 variant (CENH3) 0.04 Archaeplastida
LOC_Os11g05730.1 No alias histone (H3) 0.03 Archaeplastida
MA_125055g0020 No alias Histone H3.2 OS=Cichorium intybus (sp|q5mya4|h32_cicin : 122.0) 0.06 Archaeplastida
MA_197719g0010 No alias histone (H3) 0.03 Archaeplastida
Mp3g09090.1 No alias histone (H3) 0.03 Archaeplastida
Pp3c20_8550V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Solyc10g008910.1.1 No alias histone (H3) 0.05 Archaeplastida
Solyc12g056540.1.1 No alias histone (H3) 0.03 Archaeplastida
Zm00001e036599_P001 No alias histone (H3) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0009916 alternative oxidase activity IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!