GSVIVT01009891001


Description : RNA processing.RNA modification.rRNA/tRNA methylation.TRM61-TRM6 tRNA adenosine-methyltransferase complex.TRM6 component


Gene families : OG0005129 (Archaeplastida) Phylogenetic Tree(s): OG0005129_tree ,
OG_05_0005204 (LandPlants) Phylogenetic Tree(s): OG_05_0005204_tree ,
OG_06_0006916 (SeedPlants) Phylogenetic Tree(s): OG_06_0006916_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009891001
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Cre12.g543100 No alias RNA processing.RNA modification.rRNA/tRNA... 0.02 Archaeplastida
Mp3g13290.1 No alias component TRM6 of TRM61-TRM6 tRNA... 0.07 Archaeplastida
Smo402980 No alias RNA processing.RNA modification.rRNA/tRNA... 0.04 Archaeplastida
Solyc04g081360.3.1 No alias component TRM6 of TRM61-TRM6 tRNA... 0.03 Archaeplastida
Zm00001e018758_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0030488 tRNA methylation IEA Interproscan
CC GO:0031515 tRNA (m1A) methyltransferase complex IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0031167 rRNA methylation IEP Neighborhood
BP GO:0036265 RNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0070475 rRNA base methylation IEP Neighborhood
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR017423 TRM6 22 264
No external refs found!