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  5. GSVIVT01009948001

GSVIVT01009948001


Description : Vesicle trafficking.endomembrane trafficking.protein recycling.Retromer protein recycling complex.VPS35 component


Gene families : OG0003272 (Archaeplastida) Phylogenetic Tree(s): OG0003272_tree ,
OG_05_0003989 (LandPlants) Phylogenetic Tree(s): OG_05_0003989_tree ,
OG_06_0004878 (SeedPlants) Phylogenetic Tree(s): OG_06_0004878_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009948001
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AT2G17790 ZIP3, VPS35A VPS35 homolog A 0.04 Archaeplastida
AT3G51310 VPS35C VPS35 homolog C 0.03 Archaeplastida
LOC_Os03g58700.1 No alias component VPS35 of Retromer protein recycling complex 0.04 Archaeplastida
MA_10359162g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp3g20440.1 No alias component VPS35 of Retromer protein recycling complex 0.1 Archaeplastida
Smo167991 No alias Vesicle trafficking.endomembrane trafficking.protein... 0.03 Archaeplastida
Solyc02g083560.3.1 No alias component VPS35 of Retromer protein recycling complex 0.07 Archaeplastida
Solyc03g033400.4.1 No alias component VPS35 of Retromer protein recycling complex 0.11 Archaeplastida
Solyc12g089340.2.1 No alias component VPS35 of Retromer protein recycling complex 0.03 Archaeplastida
Zm00001e006031_P002 No alias component VPS35 of Retromer protein recycling complex 0.06 Archaeplastida
Zm00001e011849_P003 No alias component VPS35 of Retromer protein recycling complex 0.09 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0030906 retromer, cargo-selective complex IEA Interproscan
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005801 cis-Golgi network IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006474 N-terminal protein amino acid acetylation IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP Neighborhood
BP GO:0018206 peptidyl-methionine modification IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
BP GO:0031365 N-terminal protein amino acid modification IEP Neighborhood
CC GO:0031414 N-terminal protein acetyltransferase complex IEP Neighborhood
CC GO:0031417 NatC complex IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR005378 Vps35 12 1049
No external refs found!