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  5. AMTR_s00037p00164200

AMTR_s00037p00164200 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00037.78

Description : Carbohydrate metabolism.starch metabolism.synthesis.starch synthase activities.SSIII-type starch synthase


Gene families : OG0000161 (Archaeplastida) Phylogenetic Tree(s): OG0000161_tree ,
OG_05_0005539 (LandPlants) Phylogenetic Tree(s): OG_05_0005539_tree ,
OG_06_0006824 (SeedPlants) Phylogenetic Tree(s): OG_06_0006824_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00037p00164200
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
AT1G11720 ATSS3, SS3 starch synthase 3 0.02 Archaeplastida
AT4G18240 ATSS4, SS4, SSIV starch synthase 4 0.04 Archaeplastida
Cpa|evm.model.tig00020746.8 No alias Probable starch synthase 4, chloroplastic/amyloplastic... 0.01 Archaeplastida
LOC_Os04g53310.1 No alias starch synthase (SSIII) 0.03 Archaeplastida
Mp1g14910.1 No alias starch synthase (SSIV) 0.03 Archaeplastida
Mp1g23640.1 No alias granule-bound starch (amylose) synthase 0.02 Archaeplastida
Pp3c19_7710V3.1 No alias starch synthase 2 0.03 Archaeplastida
Pp3c22_6120V3.1 No alias starch synthase 2 0.03 Archaeplastida
Pp3c7_22420V3.1 No alias starch synthase 4 0.05 Archaeplastida
Solyc02g071040.3.1 No alias starch synthase (SSIV) 0.03 Archaeplastida
Zm00001e027473_P001 No alias starch synthase (SSIV) 0.04 Archaeplastida
Zm00001e036436_P004 No alias starch synthase (SSI) 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004096 catalase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004655 porphobilinogen synthase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013534 Starch_synth_cat_dom 661 849
IPR005085 CBM25 226 310
IPR005085 CBM25 400 490
IPR005085 CBM25 563 650
IPR001296 Glyco_trans_1 908 1031
No external refs found!