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  5. AMTR_s00037p00169980

AMTR_s00037p00169980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00037.81

Description : RNA biosynthesis.transcriptional activation.JUMONJI transcription factor


Gene families : OG0000515 (Archaeplastida) Phylogenetic Tree(s): OG0000515_tree ,
OG_05_0000563 (LandPlants) Phylogenetic Tree(s): OG_05_0000563_tree ,
OG_06_0000492 (SeedPlants) Phylogenetic Tree(s): OG_06_0000492_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00037p00169980
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g58210.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 Archaeplastida
MA_132844g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.05 Archaeplastida
MA_491986g0010 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.05 Archaeplastida
Solyc04g049140.4.1 No alias histone demethylase (KDM3). transcription factor (JUMONJI) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR003347 JmjC_dom 1075 1173
No external refs found!