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  5. GSVIVT01010206001

GSVIVT01010206001


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF15 component


Gene families : OG0006677 (Archaeplastida) Phylogenetic Tree(s): OG0006677_tree ,
OG_05_0007121 (LandPlants) Phylogenetic Tree(s): OG_05_0007121_tree ,
OG_06_0007805 (SeedPlants) Phylogenetic Tree(s): OG_06_0007805_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010206001
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00107550 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Cpa|evm.model.tig00000194.52 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Cre07.g328400 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Gb_28670 No alias component TAF15 of TFIId basal transcription regulation complex 0.03 Archaeplastida
LOC_Os07g19560.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.04 Archaeplastida
MA_10434282g0010 No alias component TAF15 of TFIId basal transcription regulation complex 0.05 Archaeplastida
Mp8g16600.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.11 Archaeplastida
Pp3c17_960V3.1 No alias TBP-associated factor 15 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 156 186
IPR001876 Znf_RanBP2 225 251
IPR000504 RRM_dom 15 91
No external refs found!