AMTR_s00037p00179540 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00037.86

Description : RNA processing.RNA decay.exosome complex.associated co-factors.RRP6L exoribonuclease


Gene families : OG0001601 (Archaeplastida) Phylogenetic Tree(s): OG0001601_tree ,
OG_05_0008225 (LandPlants) Phylogenetic Tree(s): OG_05_0008225_tree ,
OG_06_0009761 (SeedPlants) Phylogenetic Tree(s): OG_06_0009761_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00037p00179540
Cluster HCCA: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
AT5G35910 No alias Polynucleotidyl transferase, ribonuclease H fold protein... 0.02 Archaeplastida
GSVIVT01030425001 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Gb_34925 No alias exoribonuclease (RRP6L) 0.03 Archaeplastida
LOC_Os07g32890.1 No alias exoribonuclease (RRP6L) 0.03 Archaeplastida
LOC_Os10g30100.1 No alias exoribonuclease (RRP6L) 0.02 Archaeplastida
Mp7g12880.1 No alias exoribonuclease (RRP6L) 0.02 Archaeplastida
Zm00001e004727_P001 No alias exoribonuclease (RRP6L) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0008408 3'-5' exonuclease activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000910 cytokinesis IEP Neighborhood
MF GO:0004181 metallocarboxypeptidase activity IEP Neighborhood
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008235 metalloexopeptidase activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002121 HRDC_dom 345 388
IPR002562 3'-5'_exonuclease_dom 116 283
No external refs found!