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  5. GSVIVT01010221001

GSVIVT01010221001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010221001
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00270400 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00025p00244880 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00047p00190220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT2G45650 AGL6 AGAMOUS-like 6 0.03 Archaeplastida
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.04 Archaeplastida
AT4G37435 No alias No description available 0.03 Archaeplastida
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.06 Archaeplastida
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
GSVIVT01003864001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01006592001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01009171001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01015641001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01022182001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
Gb_03068 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.02 Archaeplastida
LOC_Os02g07430.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os05g11414.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g11970.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os12g21850.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_10289256g0010 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
MA_254338g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_78010g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_951956g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.02 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc02g091550.2.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e016964_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e018993_P001 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
Zm00001e021861_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e032487_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e036127_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 17 64
No external refs found!