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Description : Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana
Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01010244001 | |
| Cluster | HCCA: Cluster_236 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00019p00203030 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
| AMTR_s00048p00141020 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g01110... | 0.03 | Archaeplastida | |
| AMTR_s00059p00156460 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
| AMTR_s00080p00074320 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g26680,... | 0.03 | Archaeplastida | |
| AT1G11710 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Archaeplastida | |
| AT1G19290 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.18 | Archaeplastida | |
| AT2G02150 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.09 | Archaeplastida | |
| AT4G26680 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
| AT5G01110 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | Archaeplastida | |
| AT5G40400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.07 | Archaeplastida | |
| AT5G59900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
| Gb_01582 | No alias | Pentatricopeptide repeat-containing protein At4g26680,... | 0.03 | Archaeplastida | |
| Gb_03214 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
| Gb_16098 | No alias | Pentatricopeptide repeat-containing protein At5g39710... | 0.03 | Archaeplastida | |
| Gb_20239 | No alias | Pentatricopeptide repeat-containing protein At5g40400... | 0.03 | Archaeplastida | |
| Gb_30066 | No alias | Pentatricopeptide repeat-containing protein At5g39710... | 0.02 | Archaeplastida | |
| Gb_36320 | No alias | Pentatricopeptide repeat-containing protein At5g55840... | 0.03 | Archaeplastida | |
| Gb_41726 | No alias | Pentatricopeptide repeat-containing protein At2g16880... | 0.02 | Archaeplastida | |
| LOC_Os05g19390.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
| MA_111225g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
| MA_302333g0010 | No alias | Pentatricopeptide repeat-containing protein At5g55840... | 0.03 | Archaeplastida | |
| MA_37227g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
| MA_64750g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
| MA_774352g0010 | No alias | Pentatricopeptide repeat-containing protein At4g26680,... | 0.02 | Archaeplastida | |
| Solyc02g021270.3.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.14 | Archaeplastida | |
| Solyc07g047620.3.1 | No alias | Pentatricopeptide repeat-containing protein At4g26680,... | 0.03 | Archaeplastida | |
| Solyc11g073270.1.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.09 | Archaeplastida | |
| Zm00001e035584_P001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.06 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002097 | tRNA wobble base modification | IEP | Neighborhood |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | IEP | Neighborhood |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
| MF | GO:0008536 | Ran GTPase binding | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016579 | protein deubiquitination | IEP | Neighborhood |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
| MF | GO:0017016 | Ras GTPase binding | IEP | Neighborhood |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Neighborhood |
| MF | GO:0031267 | small GTPase binding | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| CC | GO:0033588 | Elongator holoenzyme complex | IEP | Neighborhood |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0048193 | Golgi vesicle transport | IEP | Neighborhood |
| MF | GO:0051020 | GTPase binding | IEP | Neighborhood |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
| MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0101005 | ubiquitinyl hydrolase activity | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| No external refs found! |