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  5. GSVIVT01010282001

GSVIVT01010282001


Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Etl1 chromatin remodeling factor


Gene families : OG0006028 (Archaeplastida) Phylogenetic Tree(s): OG0006028_tree ,
OG_05_0005482 (LandPlants) Phylogenetic Tree(s): OG_05_0005482_tree ,
OG_06_0007956 (SeedPlants) Phylogenetic Tree(s): OG_06_0007956_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010282001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
MA_390323g0010 No alias Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_491453g0010 No alias Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_928483g0010 No alias Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e007239_P001 No alias chromatin remodeling factor (Etl1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 554 666
IPR000330 SNF2_N 197 484
No external refs found!