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  5. GSVIVT01010496001

GSVIVT01010496001


Description : RNA biosynthesis.transcriptional activation.SBP transcription factor


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010496001
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00150040 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AMTR_s00106p00144050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AT2G42200 AtSPL9, SPL9 squamosa promoter binding protein-like 9 0.04 Archaeplastida
AT3G15270 SPL5 squamosa promoter binding protein-like 5 0.03 Archaeplastida
Cre02.g104700 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Cre07.g325738 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Gb_15605 No alias transcription factor (SBP) 0.04 Archaeplastida
Gb_27198 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os02g04680.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os02g08070.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os06g49010.4 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Mp1g13640.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Pp3c12_24350V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Pp3c16_7490V3.1 No alias squamosa promoter binding protein-like 2 0.03 Archaeplastida
Pp3c16_7540V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Pp3c25_8630V3.1 No alias squamosa promoter binding protein-like 2 0.06 Archaeplastida
Pp3c6_6900V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Solyc02g077920.4.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.05 Archaeplastida
Solyc10g018780.3.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc10g078700.3.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc12g038520.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e006686_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e010124_P002 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e013198_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e018817_P003 No alias transcription factor (SBP) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 128 201
No external refs found!