Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0013755 (SeedPlants) Phylogenetic Tree(s): OG_06_0013755_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G09040 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Archaeplastida | |
AT3G15130 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
LOC_Os08g28830.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
MA_153011g0010 | No alias | RNA editing factor (MEF1) | 0.04 | Archaeplastida | |
Smo80412 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | Archaeplastida | |
Solyc07g042130.4.1 | No alias | no hits & (original description: none) | 0.05 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0002097 | tRNA wobble base modification | IEP | Neighborhood |
BP | GO:0002100 | tRNA wobble adenosine to inosine editing | IEP | Neighborhood |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
MF | GO:0004000 | adenosine deaminase activity | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
BP | GO:0006382 | adenosine to inosine editing | IEP | Neighborhood |
BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006996 | organelle organization | IEP | Neighborhood |
BP | GO:0008033 | tRNA processing | IEP | Neighborhood |
MF | GO:0008251 | tRNA-specific adenosine deaminase activity | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
BP | GO:0016553 | base conversion or substitution editing | IEP | Neighborhood |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Neighborhood |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Neighborhood |
MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
MF | GO:0019239 | deaminase activity | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 443 | 466 |
IPR002885 | Pentatricopeptide_repeat | 140 | 159 |
IPR002885 | Pentatricopeptide_repeat | 70 | 95 |
IPR002885 | Pentatricopeptide_repeat | 42 | 68 |
IPR002885 | Pentatricopeptide_repeat | 369 | 415 |
IPR002885 | Pentatricopeptide_repeat | 266 | 315 |
IPR002885 | Pentatricopeptide_repeat | 165 | 210 |
No external refs found! |