GSVIVT01010869001


Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0013755 (SeedPlants) Phylogenetic Tree(s): OG_06_0013755_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010869001

Target Alias Description ECC score Gene Family Method Actions
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
LOC_Os08g28830.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_153011g0010 No alias RNA editing factor (MEF1) 0.04 Archaeplastida
Smo80412 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc07g042130.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006382 adenosine to inosine editing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 443 466
IPR002885 Pentatricopeptide_repeat 140 159
IPR002885 Pentatricopeptide_repeat 70 95
IPR002885 Pentatricopeptide_repeat 42 68
IPR002885 Pentatricopeptide_repeat 369 415
IPR002885 Pentatricopeptide_repeat 266 315
IPR002885 Pentatricopeptide_repeat 165 210
No external refs found!