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  5. GSVIVT01010889001

GSVIVT01010889001


Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.IDN/IDP regulatory protein


Gene families : OG0000867 (Archaeplastida) Phylogenetic Tree(s): OG0000867_tree ,
OG_05_0000555 (LandPlants) Phylogenetic Tree(s): OG_05_0000555_tree ,
OG_06_0000747 (SeedPlants) Phylogenetic Tree(s): OG_06_0000747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010889001
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00226630 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
AMTR_s00012p00230440 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.04 Archaeplastida
AT1G15910 No alias XH/XS domain-containing protein 0.03 Archaeplastida
AT3G12550 No alias XH/XS domain-containing protein 0.05 Archaeplastida
AT3G48670 RDM12, IDN2 XH/XS domain-containing protein 0.07 Archaeplastida
LOC_Os01g05470.1 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.03 Archaeplastida
LOC_Os01g44230.1 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.04 Archaeplastida
Mp6g07340.1 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.02 Archaeplastida
Pp3c21_20330V3.1 No alias XH/XS domain-containing protein 0.03 Archaeplastida
Solyc02g077170.3.1 No alias Factor of DNA methylation 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc06g051810.4.1 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.07 Archaeplastida
Zm00001e016919_P001 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.05 Archaeplastida
Zm00001e020386_P003 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.05 Archaeplastida
Zm00001e025803_P001 No alias IDN/IDP regulatory protein of DNA methylation pathway 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008378 galactosyltransferase activity IEP Neighborhood
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
CC GO:0030173 integral component of Golgi membrane IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0031228 intrinsic component of Golgi membrane IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR005379 Uncharacterised_XH 221 351
No external refs found!