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  5. GSVIVT01010966001

GSVIVT01010966001


Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.CUL1/CUL2 scaffold component


Gene families : OG0001282 (Archaeplastida) Phylogenetic Tree(s): OG0001282_tree ,
OG_05_0001376 (LandPlants) Phylogenetic Tree(s): OG_05_0001376_tree ,
OG_06_0000966 (SeedPlants) Phylogenetic Tree(s): OG_06_0000966_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010966001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00258510 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Cpa|evm.model.tig00020563.191 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Cre17.g734400 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_00939 No alias scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 Archaeplastida
Gb_16689 No alias scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.07 Archaeplastida
Gb_23722 No alias scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 Archaeplastida
LOC_Os05g05700.1 No alias scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 Archaeplastida
MA_17031g0010 No alias no description available(sp|q5zc88|cul1_orysj : 263.0) 0.03 Archaeplastida
Mp8g03110.1 No alias scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.02 Archaeplastida
Pp3c5_14660V3.1 No alias cullin 1 0.06 Archaeplastida
Smo173394 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
Solyc01g067100.4.1 No alias scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.04 Archaeplastida
Solyc01g067270.4.1 No alias no description available(sp|q5zc88|cul1_orysj : 299.0) 0.02 Archaeplastida
Solyc06g084520.3.1 No alias scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 Archaeplastida
Solyc09g074680.3.1 No alias scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 Archaeplastida
Zm00001e027502_P001 No alias scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.08 Archaeplastida
Zm00001e040431_P004 No alias scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.12 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR019559 Cullin_neddylation_domain 671 733
IPR001373 Cullin_N 27 644
No external refs found!