GSVIVT01011008001


Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0090566 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011008001
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00211p00025860 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.06 Archaeplastida
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.04 Archaeplastida
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.03 Archaeplastida
GSVIVT01021552001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 Archaeplastida
Gb_12414 No alias transcription factor (ARF) 0.05 Archaeplastida
Gb_17830 No alias transcription factor (ARF) 0.06 Archaeplastida
Gb_32864 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os01g48060.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os04g43910.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os04g57610.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os05g43920.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c14_16990V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Pp3c6_26890V3.1 No alias auxin response factor 16 0.05 Archaeplastida
Solyc03g031970.4.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc07g016180.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc07g042260.4.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc08g082630.3.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e013061_P001 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e016366_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e028396_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e030290_P005 No alias transcription factor (ARF) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 137 238
IPR010525 Auxin_resp 263 343
IPR033389 AUX/IAA_dom 643 682
No external refs found!