GSVIVT01011029001

Description : Chromatin organisation.histones.H2A-type histone

Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0112486 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0090571 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01011029001
Cluster	HCCA: Cluster_206

Target	Alias	Description	ECC score	Gene Family Method
Gb_07070	No alias	histone (H2A)	0.03	Archaeplastida
MA_924620g0010	No alias	histone (H2A)	0.03	Archaeplastida
Smo170948	No alias	Chromatin organisation.histones.H2A-type histone	0.02	Archaeplastida
Solyc06g084430.4.1	No alias	histone (H2A)	0.03	Archaeplastida
Solyc11g073260.2.1	No alias	histone (H2A)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0004451	isocitrate lyase activity	IEP	Neighborhood
CC	GO:0005811	lipid droplet	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	Neighborhood
MF	GO:0016830	carbon-carbon lyase activity	IEP	Neighborhood
MF	GO:0016833	oxo-acid-lyase activity	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR032454	Histone_H2A_C	97	128
IPR007125	Histone_H2A/H2B/H3	22	93

External Links

No external refs found!

GSVIVT01011029001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation