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  5. GSVIVT01011077001

GSVIVT01011077001


Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm2 component


Gene families : OG0003406 (Archaeplastida) Phylogenetic Tree(s): OG0003406_tree ,
OG_05_0008218 (LandPlants) Phylogenetic Tree(s): OG_05_0008218_tree ,
OG_06_0010664 (SeedPlants) Phylogenetic Tree(s): OG_06_0010664_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011077001
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
Gb_08277 No alias component LSm2 of U6-associated LSm accessory... 0.04 Archaeplastida
Gb_13034 No alias component LSm2 of U6-associated LSm accessory... 0.02 Archaeplastida
Pp3c11_10290V3.1 No alias Small nuclear ribonucleoprotein family protein 0.04 Archaeplastida
Pp3c2_19710V3.1 No alias Small nuclear ribonucleoprotein family protein 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 51 115
No external refs found!