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  5. GSVIVT01011280001

GSVIVT01011280001


Description : Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0005495 (SeedPlants) Phylogenetic Tree(s): OG_06_0005495_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011280001
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00015p00258950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.04 Archaeplastida
AMTR_s00024p00204830 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida
AMTR_s00024p00240360 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g06000... 0.02 Archaeplastida
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.02 Archaeplastida
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.02 Archaeplastida
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT4G01400 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.07 Archaeplastida
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
Gb_08958 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
LOC_Os01g48140.1 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
LOC_Os05g11700.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_10316984g0010 No alias group-II intron mitochondrial splicing factor (MISF74) 0.03 Archaeplastida
MA_107877g0010 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.02 Archaeplastida
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
Solyc11g073230.1.1 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.04 Archaeplastida
Solyc12g014330.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 Archaeplastida
Zm00001e030818_P001 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 224 273
IPR002885 Pentatricopeptide_repeat 409 451
IPR002885 Pentatricopeptide_repeat 159 203
IPR002885 Pentatricopeptide_repeat 334 361
IPR002885 Pentatricopeptide_repeat 52 81
IPR002885 Pentatricopeptide_repeat 93 116
IPR002885 Pentatricopeptide_repeat 292 323
No external refs found!