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  5. GSVIVT01011415001

GSVIVT01011415001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.zf-HD transcription factor


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0000088 (SeedPlants) Phylogenetic Tree(s): OG_06_0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011415001
Cluster HCCA: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00261620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AT1G14440 AtHB31, ZHD4, HB31 homeobox protein 31 0.03 Archaeplastida
AT1G75240 AtHB33, ZHD5, HB33 homeobox protein 33 0.03 Archaeplastida
AT2G02540 ZHD3, HB21, ATHB21, ZFHD4 homeobox protein 21 0.03 Archaeplastida
Gb_18045 No alias transcription factor (zf-HD) 0.03 Archaeplastida
LOC_Os03g50920.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
LOC_Os09g29130.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_12314g0010 No alias transcription factor (zf-HD) 0.04 Archaeplastida
MA_19630g0030 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_32594g0010 No alias transcription factor (zf-HD) 0.03 Archaeplastida
MA_36755g0010 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_461761g0010 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_91212g0010 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Mp8g08190.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida
Pp3c7_15000V3.1 No alias homeobox protein 33 0.02 Archaeplastida
Solyc02g067330.1.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Solyc03g116070.1.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Solyc05g007580.1.1 No alias transcription factor (zf-HD) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 27 79
No external refs found!