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  5. GSVIVT01011502001

GSVIVT01011502001


Description : RNA biosynthesis.transcriptional activation.FAR1 transcription factor


Gene families : OG0000638 (Archaeplastida) Phylogenetic Tree(s): OG0000638_tree ,
OG_05_0000359 (LandPlants) Phylogenetic Tree(s): OG_05_0000359_tree ,
OG_06_0000420 (SeedPlants) Phylogenetic Tree(s): OG_06_0000420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011502001
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g39540.1 No alias transcription factor (FAR1) 0.04 Archaeplastida
Solyc01g096850.4.1 No alias transcription factor (FAR1) 0.02 Archaeplastida
Solyc06g073670.4.1 No alias transcription factor (FAR1) 0.04 Archaeplastida
Solyc07g043270.3.1 No alias transcription factor (FAR1). FRS-type red/far-red light... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004330 FAR1_DNA_bnd_dom 123 217
IPR007527 Znf_SWIM 631 655
IPR018289 MULE_transposase_dom 338 431
No external refs found!