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  5. GSVIVT01011807001

GSVIVT01011807001


Description : External stimuli response.biotic stress.symbiont-associated response.lipid biosynthesis.FatM palmitoyl-ACP thioesterase


Gene families : OG0000593 (Archaeplastida) Phylogenetic Tree(s): OG0000593_tree ,
OG_05_0000715 (LandPlants) Phylogenetic Tree(s): OG_05_0000715_tree ,
OG_06_0011407 (SeedPlants) Phylogenetic Tree(s): OG_06_0011407_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011807001
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AT1G08510 FATB fatty acyl-ACP thioesterases B 0.03 Archaeplastida
LOC_Os11g43820.1 No alias palmitoyl-ACP thioesterase 0.03 Archaeplastida
MA_338g0010 No alias Oleoyl-acyl carrier protein thioesterase 1,... 0.04 Archaeplastida
Zm00001e002333_P001 No alias No annotation 0.03 Archaeplastida
Zm00001e034620_P003 No alias oleoyl-ACP thioesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006633 fatty acid biosynthetic process IEA Interproscan
MF GO:0016790 thiolester hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 617 666
IPR002885 Pentatricopeptide_repeat 547 594
IPR002885 Pentatricopeptide_repeat 337 386
IPR002885 Pentatricopeptide_repeat 407 456
IPR002885 Pentatricopeptide_repeat 232 281
IPR002885 Pentatricopeptide_repeat 170 194
IPR002864 Acyl-ACP_thioesterase 775 1053
IPR002885 Pentatricopeptide_repeat 508 541
IPR002885 Pentatricopeptide_repeat 299 331
No external refs found!