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  5. GSVIVT01012052001

GSVIVT01012052001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL36a component


Gene families : OG0002069 (Archaeplastida) Phylogenetic Tree(s): OG0002069_tree ,
OG_05_0002870 (LandPlants) Phylogenetic Tree(s): OG_05_0002870_tree ,
OG_06_0002967 (SeedPlants) Phylogenetic Tree(s): OG_06_0002967_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012052001
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00106300 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
AMTR_s00077p00123980 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
AT3G23390 No alias Zinc-binding ribosomal protein family protein 0.07 Archaeplastida
AT4G14320 No alias Zinc-binding ribosomal protein family protein 0.21 Archaeplastida
Cpa|evm.model.tig00000489.11 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
Cre06.g310700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Gb_13148 No alias component RPL36a of LSU proteome component 0.12 Archaeplastida
Gb_34419 No alias component RPL36a of LSU proteome component 0.14 Archaeplastida
LOC_Os07g26740.1 No alias component RPL36a of LSU proteome component 0.1 Archaeplastida
LOC_Os07g33898.1 No alias component RPL36a of LSU proteome component 0.07 Archaeplastida
LOC_Os07g33997.1 No alias component RPL36a of LSU proteome component 0.07 Archaeplastida
MA_99845g0010 No alias component RPL36a of LSU proteome component 0.16 Archaeplastida
Mp2g25770.1 No alias component RPL36a of LSU proteome component 0.18 Archaeplastida
Pp3c26_11220V3.1 No alias Zinc-binding ribosomal protein family protein 0.16 Archaeplastida
Pp3c2_27320V3.1 No alias Zinc-binding ribosomal protein family protein 0.04 Archaeplastida
Pp3c3_10260V3.1 No alias Zinc-binding ribosomal protein family protein 0.18 Archaeplastida
Pp3c4_27290V3.1 No alias Zinc-binding ribosomal protein family protein 0.08 Archaeplastida
Pp3c7_20120V3.1 No alias Zinc-binding ribosomal protein family protein 0.04 Archaeplastida
Smo161986 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
Solyc03g112850.3.1 No alias component RPL36a of LSU proteome component 0.12 Archaeplastida
Zm00001e010489_P002 No alias component RPL36a of LSU proteome component 0.26 Archaeplastida
Zm00001e033410_P001 No alias component RPL36a of LSU proteome component 0.12 Archaeplastida
Zm00001e035123_P001 No alias component RPL36a of LSU proteome component 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000552 Ribosomal_L44e 23 97
No external refs found!