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  5. GSVIVT01012139001

GSVIVT01012139001


Description : Cell wall.pectin.modification and degradation.polygalacturonase activities.QRT3 polygalacturonase


Gene families : OG0003590 (Archaeplastida) Phylogenetic Tree(s): OG0003590_tree ,
OG_05_0002501 (LandPlants) Phylogenetic Tree(s): OG_05_0002501_tree ,
OG_06_0001950 (SeedPlants) Phylogenetic Tree(s): OG_06_0001950_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012139001
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00255270 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00102p00131940 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.03 Archaeplastida
AMTR_s00319p00013650 evm_27.TU.AmTr_v1... Polygalacturonase QRT3 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s03255p00000400 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.04 Archaeplastida
AMTR_s05553p00004300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.04 Archaeplastida
AT4G20050 QRT3 Pectin lyase-like superfamily protein 0.11 Archaeplastida
LOC_Os04g52320.1 No alias polygalacturonase (QRT3) 0.05 Archaeplastida
MA_10425986g0010 No alias polygalacturonase (QRT3) 0.02 Archaeplastida
MA_10425986g0020 No alias polygalacturonase (QRT3) 0.02 Archaeplastida
MA_917578g0010 No alias polygalacturonase (QRT3) 0.04 Archaeplastida
Solyc02g068400.3.1 No alias polygalacturonase (QRT3) 0.15 Archaeplastida
Zm00001e006958_P005 No alias polygalacturonase (QRT3) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003756 protein disulfide isomerase activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006094 gluconeogenesis IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016860 intramolecular oxidoreductase activity IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Neighborhood
BP GO:0019319 hexose biosynthetic process IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0046364 monosaccharide biosynthetic process IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!