GSVIVT01012211001


Description : Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0003060 (Archaeplastida) Phylogenetic Tree(s): OG0003060_tree ,
OG_05_0005458 (LandPlants) Phylogenetic Tree(s): OG_05_0005458_tree ,
OG_06_0008725 (SeedPlants) Phylogenetic Tree(s): OG_06_0008725_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012211001
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Zm00001e010701_P001 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 182 208
IPR002885 Pentatricopeptide_repeat 515 563
No external refs found!