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  5. GSVIVT01012225001

GSVIVT01012225001


Description : RNA biosynthesis.transcriptional repression.AFP/NINJA transcriptional co-repressor


Gene families : OG0000721 (Archaeplastida) Phylogenetic Tree(s): OG0000721_tree ,
OG_05_0000424 (LandPlants) Phylogenetic Tree(s): OG_05_0000424_tree ,
OG_06_0000404 (SeedPlants) Phylogenetic Tree(s): OG_06_0000404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012225001
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
AT1G69260 AFP1 ABI five binding protein 0.06 Archaeplastida
AT3G07255 No alias No description available 0.03 Archaeplastida
AT3G29575 AFP3 ABI five binding protein 3 0.08 Archaeplastida
Gb_29524 No alias transcriptional co-repressor (AFP/NINJA) 0.03 Archaeplastida
LOC_Os03g11550.1 No alias transcriptional co-repressor (AFP/NINJA) 0.03 Archaeplastida
LOC_Os03g30570.1 No alias transcriptional co-repressor (AFP/NINJA) 0.08 Archaeplastida
LOC_Os07g41160.1 No alias transcriptional co-repressor (AFP/NINJA) 0.05 Archaeplastida
MA_16384g0010 No alias transcriptional co-repressor (AFP/NINJA) 0.04 Archaeplastida
Smo446487 No alias RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.03 Archaeplastida
Solyc02g030633.1.1 No alias transcriptional co-repressor (AFP/NINJA) 0.03 Archaeplastida
Solyc02g066855.1.1 No alias transcriptional co-repressor (AFP/NINJA) 0.03 Archaeplastida
Solyc02g066900.3.1 No alias No annotation 0.02 Archaeplastida
Solyc04g005380.3.1 No alias transcriptional co-repressor (AFP/NINJA) 0.07 Archaeplastida
Solyc05g012210.4.1 No alias transcriptional co-repressor (AFP/NINJA) 0.03 Archaeplastida
Zm00001e035495_P001 No alias transcriptional co-repressor (AFP/NINJA) 0.05 Archaeplastida
Zm00001e038719_P006 No alias transcriptional co-repressor (AFP/NINJA) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006814 sodium ion transport IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR032308 Jas 280 344
IPR032310 NINJA_B 85 209
IPR012463 Ninja_motif 30 64
No external refs found!