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  5. AMTR_s00038p00136890

AMTR_s00038p00136890 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00038.82

Description : Chromatin organisation.histone chaperone activities.SPT6-type histone chaperone


Gene families : OG0003491 (Archaeplastida) Phylogenetic Tree(s): OG0003491_tree ,
OG_05_0005087 (LandPlants) Phylogenetic Tree(s): OG_05_0005087_tree ,
OG_06_0005020 (SeedPlants) Phylogenetic Tree(s): OG_06_0005020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00038p00136890
Cluster HCCA: Cluster_260

Target Alias Description ECC score Gene Family Method Actions
AT1G65440 GTB1 global transcription factor group B1 0.08 Archaeplastida
Cpa|evm.model.tig00001486.8 No alias Chromatin organisation.histone chaperone... 0.04 Archaeplastida
Cre09.g403182 No alias Chromatin organisation.histone chaperone... 0.03 Archaeplastida
GSVIVT01025815001 No alias Chromatin organisation.histone chaperone... 0.04 Archaeplastida
Gb_29261 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.03 Archaeplastida
LOC_Os05g41510.1 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.02 Archaeplastida
MA_13648g0010 No alias Transcription elongation factor SPT6 homolog... 0.04 Archaeplastida
MA_13648g0020 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.06 Archaeplastida
Mp2g25720.1 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.05 Archaeplastida
Pp3c5_24480V3.1 No alias global transcription factor group B1 0.04 Archaeplastida
Solyc10g081020.2.1 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.04 Archaeplastida
Zm00001e032018_P003 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005665 RNA polymerase II, core complex IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!