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  5. GSVIVT01012723001

GSVIVT01012723001


Description : Carbohydrate metabolism.starch metabolism.synthesis.starch synthase activities.SSIII-type starch synthase


Gene families : OG0000161 (Archaeplastida) Phylogenetic Tree(s): OG0000161_tree ,
OG_05_0005539 (LandPlants) Phylogenetic Tree(s): OG_05_0005539_tree ,
OG_06_0006824 (SeedPlants) Phylogenetic Tree(s): OG_06_0006824_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012723001
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00051890 evm_27.TU.AmTr_v1... Carbohydrate metabolism.starch... 0.03 Archaeplastida
AMTR_s00189p00041140 evm_27.TU.AmTr_v1... Carbohydrate metabolism.starch... 0.04 Archaeplastida
AT1G11720 ATSS3, SS3 starch synthase 3 0.06 Archaeplastida
AT5G24300 SSI1, ATSS1, SSI Glycogen/starch synthases, ADP-glucose type 0.08 Archaeplastida
Cpa|evm.model.tig00000135.1 No alias Granule-bound starch synthase 1,... 0.03 Archaeplastida
Cre06.g282000 No alias Carbohydrate metabolism.starch... 0.12 Archaeplastida
Cre16.g665800 No alias Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 Archaeplastida
Cre17.g721500 No alias Carbohydrate metabolism.starch... 0.03 Archaeplastida
MA_10429460g0020 No alias Granule-bound starch synthase 1,... 0.03 Archaeplastida
MA_10437241g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_482181g0010 No alias Soluble starch synthase 1, chloroplastic/amyloplastic... 0.04 Archaeplastida
Mp1g23640.1 No alias granule-bound starch (amylose) synthase 0.05 Archaeplastida
Pp3c19_7710V3.1 No alias starch synthase 2 0.03 Archaeplastida
Solyc02g080570.3.1 No alias starch synthase (SSIII) 0.04 Archaeplastida
Zm00001e039962_P001 No alias starch synthase (SSIII) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR013534 Starch_synth_cat_dom 599 787
IPR001296 Glyco_trans_1 846 968
IPR005085 CBM25 341 427
IPR005085 CBM25 503 588
No external refs found!