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  5. GSVIVT01012869001

GSVIVT01012869001


Description : RNA biosynthesis.transcriptional activation.PLATZ transcription factor


Gene families : OG0000197 (Archaeplastida) Phylogenetic Tree(s): OG0000197_tree ,
OG_05_0000880 (LandPlants) Phylogenetic Tree(s): OG_05_0000880_tree ,
OG_06_0001431 (SeedPlants) Phylogenetic Tree(s): OG_06_0001431_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012869001
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00211460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.04 Archaeplastida
AMTR_s00008p00208550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.05 Archaeplastida
AMTR_s00032p00241350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.02 Archaeplastida
AMTR_s00033p00166000 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.04 Archaeplastida
AT1G43000 No alias PLATZ transcription factor family protein 0.03 Archaeplastida
AT2G12646 No alias PLATZ transcription factor family protein 0.05 Archaeplastida
AT5G46710 No alias PLATZ transcription factor family protein 0.01 Archaeplastida
GSVIVT01012125001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.03 Archaeplastida
GSVIVT01031446001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.04 Archaeplastida
Gb_29488 No alias transcription factor (PLATZ) 0.03 Archaeplastida
Gb_32018 No alias transcription factor (PLATZ) 0.04 Archaeplastida
LOC_Os01g33370.1 No alias transcription factor (PLATZ) 0.03 Archaeplastida
LOC_Os02g07650.1 No alias transcription factor (PLATZ) 0.03 Archaeplastida
LOC_Os02g09070.1 No alias transcription factor (PLATZ) 0.03 Archaeplastida
LOC_Os02g46610.1 No alias transcription factor (PLATZ) 0.03 Archaeplastida
LOC_Os04g50120.1 No alias transcription factor (PLATZ) 0.04 Archaeplastida
LOC_Os10g42410.3 No alias transcription factor (PLATZ) 0.03 Archaeplastida
MA_10310g0010 No alias transcription factor (PLATZ) 0.04 Archaeplastida
MA_12209g0020 No alias transcription factor (PLATZ) 0.04 Archaeplastida
MA_4953568g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_8256450g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_8773709g0010 No alias transcription factor (PLATZ) 0.03 Archaeplastida
MA_9760264g0010 No alias transcription factor (PLATZ) 0.03 Archaeplastida
Mp1g07250.1 No alias transcription factor (PLATZ) 0.02 Archaeplastida
Pp3c15_23190V3.1 No alias PLATZ transcription factor family protein 0.02 Archaeplastida
Pp3c26_11480V3.1 No alias PLATZ transcription factor family protein 0.02 Archaeplastida
Pp3c4_30530V3.1 No alias PLATZ transcription factor family protein 0.04 Archaeplastida
Solyc07g007320.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc08g005100.3.1 No alias transcription factor (PLATZ) 0.04 Archaeplastida
Solyc08g076860.3.1 No alias transcription factor (PLATZ) 0.03 Archaeplastida
Solyc12g010470.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e002426_P001 No alias transcription factor (PLATZ) 0.05 Archaeplastida
Zm00001e007100_P003 No alias transcription factor (PLATZ) 0.03 Archaeplastida
Zm00001e013748_P001 No alias transcription factor (PLATZ) 0.03 Archaeplastida
Zm00001e013865_P001 No alias transcription factor (PLATZ) 0.03 Archaeplastida
Zm00001e037743_P001 No alias transcription factor (PLATZ) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008172 S-methyltransferase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006734 DUF597 62 133
No external refs found!